Web1. sep 2012 · The conformational change can ... we used a combination of flexible fitting methods including the realspace structure refinement ... (resn1 and resn2) and the number of Gaussian functions used for ... Web17. jan 2024 · This article describes the implementation of real-space refinement in the phenix.real_space_refine program from the Phenix suite. Use of a simplified refinement target function enables fast calculation, which in turn makes it possible to identify optimal data-restraints weight as part of routine refinements with little runtime cost.
Real-space refinement in Phenix for cryo-EM and crystallography
Web1. jún 2024 · This article describes the implementation of real-space refinement in the phenix.real_space_refine program from the PHENIX suite. The use of a simplified … WebSupporting: 3, Contrasting: 1, Mentioning: 832 - A description is provided of the implementation of real-space refinement in the phenix.real_space_refine program from the PHENIX suite and its application to the re-refinement of cryo-EM-derived models. bosch australia service number
phenix.real_space_refine: a tool for refinement a model against a map
WebPHENIX can work on mrc files, I always link a .mrc file to a .map file and use this for PHENIX. Regarding the Chain ID's you have to give every chain a unique ID. You can use a-z, A-Z and 0-9. You ... Web17. jan 2024 · Re-refinement of 385 cryo-EM derived models available in the PDB at resolutions of 6 Å or better shows significant improvement of models and the fit of these models to the target maps. Synopsis A description of the implementation of real-space refinement in the phenix.real_space_refine program from the Phenix suite and its … WebNeither phenix.refine, DEN nor REFMAC5 was able to improve the models beyond an R. free. However, Rosetta-Phenix refinement starting from the conforma-tion in the absence of calcium (PDB 2ZBG) resulted in a greatly improved fit to the data: R. free bosch australia washing machine